NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0194023_1012137

Scaffold Ga0194023_1012137


Overview

Basic Information
Taxon OID3300019756 Open in IMG/M
Scaffold IDGa0194023_1012137 Open in IMG/M
Source Dataset NameFreshwater microbial communities from the Broadkill River, Lewes, Delaware, United States ? IW6Sep16_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1730
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (57.14%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location
Location NameUSA: Delaware
CoordinatesLat. (o)38.7906Long. (o)-75.1638Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002594Metagenome / Metatranscriptome545Y
F019311Metagenome230Y
F026283Metagenome / Metatranscriptome198N
F084306Metagenome / Metatranscriptome112N

Sequences

Protein IDFamilyRBSSequence
Ga0194023_10121372F019311AGGAGMTFTFKHPSKYKKEVKETKYVPIRECKVGKKYRFEEHEHTVAEYEYNYSYMTGTCVTNEPGPNIVFGKKEQLIEIKLDFPRPELQGEFDNKLMFFFPHDEAMYDDVKVVEYE
Ga0194023_10121375F084306GGAGGMSKALLDKLSQKRNLEAQWASEFIANGSVTVKMVELGKKIGQLAQELKEDSENK
Ga0194023_10121376F002594GGAMAKIPTSRLNTAPKEYDKIDFDQLIEDLQDMIKLLNTTYPKDIVDEEDKKQWFLMR
Ga0194023_10121377F026283AGAAGMVFNAMSNCNNINPITGGSTVGDIPFYLAVQEGKVPGYSMINKFGYNP
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