| Basic Information | |
|---|---|
| Taxon OID | 3300019751 Open in IMG/M |
| Scaffold ID | Ga0194029_1007688 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from the Broadkill River, Lewes, Delaware, United States ? IW18Oct16_MG |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 1493 |
| Total Scaffold Genes | 5 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (60.00%) |
| Novel Protein Genes | 2 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (100.00%) |
| Associated Families | 2 |
| Taxonomy | |
|---|---|
| unclassified Hyphomonas → Hyphomonas sp. | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Microbial Communities From Sediments And Microbial Mats In Various Locations |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Delaware | |||||||
| Coordinates | Lat. (o) | 38.7906 | Long. (o) | -75.1638 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F019311 | Metagenome | 230 | Y |
| F027183 | Metagenome / Metatranscriptome | 195 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0194029_10076881 | F019311 | AGG | MNHTFKHPSKYKKEVKETKYVPIRECKVGKKYRFEEHEHTVVDYEYNYSYMTGTCVTNKPGPNIVFGKKEQLIEIKLDFPRPELQGEFDNKLMFFFPHDEAMYDDVKVVEYE |
| Ga0194029_10076883 | F027183 | AGGAG | MVNCRECWDDGYIWTHPSGSEDDKPRFEKCDACGILKDDNEAQAKASSRSYFLVWWNGFQVNIINGGSKPVSSEIRHEDFNEDHGWHEEDIEEVSCLKIGEKYDTGGPIENVTIYRWK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |