NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0194001_1008799

Scaffold Ga0194001_1008799


Overview

Basic Information
Taxon OID3300019730 Open in IMG/M
Scaffold IDGa0194001_1008799 Open in IMG/M
Source Dataset NameSediment microbial communities from the Broadkill River, Lewes, Delaware, United States ? FLT_7-8_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)975
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → unclassified Rhodobacteraceae → Rhodobacteraceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Sediment → Unclassified → Sediment → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location
Location NameUSA: Delaware
CoordinatesLat. (o)38.7906Long. (o)-75.1638Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005843Metagenome / Metatranscriptome388Y
F009460Metagenome / Metatranscriptome317N
F020173Metagenome225N
F064688Metagenome / Metatranscriptome128N

Sequences

Protein IDFamilyRBSSequence
Ga0194001_10087992F020173GGAMICTTCDGTGFIELPSFVNTPDSDAWTTVRCPECQDEDYFDWRNEEEEE
Ga0194001_10087994F005843GGTGGMTLAEPVFMAFAVFSSVDECKAFAKHYDLARIFEPQCVEMGGEADYRRPWPDVRPQPRPTQENENG
Ga0194001_10087995F009460AGGAGMAKWDLSKLENSASVGAYIDEDSSTPTQPTPQMLVMSIRRKADIMRMDAGRGPERLTIKQRAEEIMALCEMLEKRL
Ga0194001_10087996F064688GGAGVTENMTPLERWKELAIIENARMKRRLIGRDDMHAYAHKPWPLEKLRKEIKRCLSRHGELSVGDLCSM
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