NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181562_10046278

Scaffold Ga0181562_10046278


Overview

Basic Information
Taxon OID3300019459 Open in IMG/M
Scaffold IDGa0181562_10046278 Open in IMG/M
Source Dataset NameCoastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011511BT metaG (megahit assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2682
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (88.89%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.972Long. (o)-81.028Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004952Metagenome417Y
F005590Metagenome / Metatranscriptome395N
F005843Metagenome / Metatranscriptome388Y
F020173Metagenome225N

Sequences

Protein IDFamilyRBSSequence
Ga0181562_100462781F004952N/AHISPRLLQQAHANLDDICVGIIVQNAVEEQRERTPWVAAYVQERRAARDVLGLATDAPAEVVQAPTEEPKPVDWADVQREIIAFLRSNDDTYFDTAEIAEVVGVETRKLSQHLENMHSRGEICKAHVNQRANQQRASLVLWSIDADVYK
Ga0181562_100462782F020173GGAMICTTCDGTGFIELPRFVNTPDSDAWTIVRCPECQDEDDFDWRNEEEEE
Ga0181562_100462786F005843GGAGMTLAEPVFMAFVIFSSADECKEFAKYYDLARIFEPQCVEMGGEADYRRPWPDVRPQPRPTQESNNG
Ga0181562_100462788F005590GGAGMTESLTPLERWKELAIIENARMKRRLIGRDDMHAYAHKPWPLEKLRKEIKRCLSRHGELSVGDLCSMIEQDAVHIDIGLKTMRERRTIVKTSFIEGQQLYRLRTQEEFAF
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