| Basic Information | |
|---|---|
| Taxon OID | 3300019458 Open in IMG/M |
| Scaffold ID | Ga0187892_10003572 Open in IMG/M |
| Source Dataset Name | Bio-ooze microbial communities from a basaltic lava cave in the Kipuka Kanohina Cave System on the Island of Hawaii, USA - MA170107-3 metaG |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 28109 |
| Total Scaffold Genes | 32 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 23 (71.88%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Cave → Unclassified → Unclassified → Bio-Ooze → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli) |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: the Island of Hawaii | |||||||
| Coordinates | Lat. (o) | 19.0643 | Long. (o) | -155.8008 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F008142 | Metagenome / Metatranscriptome | 338 | Y |
| F016892 | Metagenome / Metatranscriptome | 244 | Y |
| F054766 | Metagenome | 139 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0187892_1000357213 | F054766 | N/A | VPYCPPALLDDVADVLAEVRTWAGVVEKKPGIFYVRRQPFLHFHLVEGGRRRADVKGRTGWAQLDLPRPVSTARRRVFLRELRLRYREK |
| Ga0187892_100035723 | F016892 | N/A | MARAFSDVCERVGLTSAPAAATMETMKWPSSRSVALLWLLAALSLVGWLIVNLDTAGWIILTLTVGLMAFELTRGRNEQGTPPKHRVPDEPTS |
| Ga0187892_100035725 | F008142 | AGGGGG | MKRYVLTLAWVLWAHEMAVVGDTLLDRGYTAIDSFETRQQCHTAMADYAGLRLARQGRVRVEFSCLPEKVNPKAPKTAIG |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |