| Basic Information | |
|---|---|
| Taxon OID | 3300019362 Open in IMG/M |
| Scaffold ID | Ga0173479_10036428 Open in IMG/M |
| Source Dataset Name | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S104-311B-1 (version 2) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 1530 |
| Total Scaffold Genes | 5 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts) |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Wisconsin | |||||||
| Coordinates | Lat. (o) | 43.3 | Long. (o) | -89.38 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F013183 | Metagenome / Metatranscriptome | 273 | Y |
| F021567 | Metagenome / Metatranscriptome | 218 | Y |
| F028209 | Metagenome / Metatranscriptome | 192 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0173479_100364282 | F021567 | GAG | VTDAVSPIPDTEHWSYGSFQFDLDTARRTVPLVRDDGTAVAFTVPEFVSEPRDLAEISRIVIAACERWEKRQGVGG |
| Ga0173479_100364284 | F013183 | GAG | VANTPQEHTQEKLQEYLHCWTLPGGRLTPDQTRALLAWDGTPDAERAGLESSLASTQQQVPAQPLAPNQRRGHVSWLDRLKRVLGH |
| Ga0173479_100364285 | F028209 | GAGG | VPEFGPRPSRRSLDDRPRFRPRRSHAPLVTKVPKDAPAWLVEAAGPHWGTTEWGAWEGYRAELTALGVPATHLKPIGSLSRPTEISAHIPSLTPWVSVPIDWQQYGDRDAPLHAFRELVSEVAKTAT |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |