NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181512_1561548

Scaffold Ga0181512_1561548


Overview

Basic Information
Taxon OID3300019270 Open in IMG/M
Scaffold IDGa0181512_1561548 Open in IMG/M
Source Dataset NameMetatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin17_10_metaT (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)865
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)47.1149Long. (o)-88.5476Alt. (m)Depth (m).1 to .2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003383Metagenome / Metatranscriptome490Y
F069734Metagenome / Metatranscriptome123N

Sequences

Protein IDFamilyRBSSequence
Ga0181512_15615481F003383N/AGSCIVPFCLSMRRRVAPLPQSSRSARVASLGCPVPAPFLLSRRPNPQVAPWFRAFGRAGDGRSSCPERRMPLTLPVSASFRVAPENLAFSCSARDVGPGSPLVLHLRLYRRSIIESPRCSHHSAVPTGRSSGFPKSRPFGIADDSQSELPRTLNPPAPTDGYPSYLGSRTIRFALVESPGRPGHSPLATAIDQFPGCPKSWVSHRSPISRASSFPEPWFLG
Ga0181512_15615482F069734GAGMSPWLNRTLHPRLTPRMNLRVHSGHGKLGMASGALLIPIRRFTIGKP
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