NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0182066_1625615

Scaffold Ga0182066_1625615


Overview

Basic Information
Taxon OID3300019262 Open in IMG/M
Scaffold IDGa0182066_1625615 Open in IMG/M
Source Dataset NameMetatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Georgia, USA - 101412AT (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1304
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.972Long. (o)-81.028Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F031107Metagenome / Metatranscriptome183Y
F043156Metagenome / Metatranscriptome157Y

Sequences

Protein IDFamilyRBSSequence
Ga0182066_16256151F043156N/AEGIKYQEPLNIMEVDLQVQNGNCVSSASGSLTATQRNITVTNRVSYDGLCLDDLNSKYLGISALSAGSYNETFALAETYTDMIVNQMKKSDDAFLWNTTNGLGALTSGSTSGVVVPTDATGSFTSATALTRLDAMIEAIPSDIADRDDLTIWMSTANFRKYVTALRSANNFYFDPESISNRTGILQMAYPFQNVKVVGTSGITGNRIALMPDAYAVVGTDLMSDETNFQLWYDINGDQLKHRLKSKLGVQVAFPEYIVSNDQN
Ga0182066_16256152F031107N/AMACDVTAGFQLGCRDNSGGIKSVYILSGSVTTITESSDEITDISGDGVFLSI
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