NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0188881_10005993

Scaffold Ga0188881_10005993


Overview

Basic Information
Taxon OID3300019146 Open in IMG/M
Scaffold IDGa0188881_10005993 Open in IMG/M
Source Dataset NameMetatranscriptome of marine microbial communities from Baltic Sea - GS860_ls5
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterJ. Craig Venter Institute (JCVI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1470
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Metatranscriptome Of Marine Microbial Communities From Baltic Sea

Source Dataset Sampling Location
Location NameBaltic Sea
CoordinatesLat. (o)54.570232Long. (o)11.332183Alt. (m)Depth (m).3
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000441Metagenome / Metatranscriptome1136Y
F001019Metagenome / Metatranscriptome804Y
F004666Metagenome / Metatranscriptome428Y
F034924Metagenome / Metatranscriptome173Y

Sequences

Protein IDFamilyRBSSequence
Ga0188881_100059931F004666AGGAMTTKREYLVSKGITVGRRGRFSSAANKALQDAAAQGVVFQAEKPQPKK
Ga0188881_100059932F034924GGAGLPTYRVFGTRYQNYYTIVSAADEYEAAEIANALPSEDWNFVPIDDVIEATDVFLDEDTEIDLQVNM
Ga0188881_100059933F001019AGAAGGMTNYEPSLEILEVNYGCSPGGVDMFEVYDKSDIPLSVPVYETESLTKAVKYCYNLGKDFTVRTLAEWESRELANL
Ga0188881_100059934F000441AGGAGGMQQTDIYINDQLSKAQKLLWSGSLHEVDEAHNIIAKLINDRMEKAEGQND
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