NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0192869_10012094

Scaffold Ga0192869_10012094


Overview

Basic Information
Taxon OID3300019032 Open in IMG/M
Scaffold IDGa0192869_10012094 Open in IMG/M
Source Dataset NameMetatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_066 - TARA_N000000805 (ERX1782188-ERR1712216)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterCanada's Michael Smith Genome Sciences Centre
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1988
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameAtlantic Ocean: TARA_066
CoordinatesLat. (o)-34.9449Long. (o)17.9189Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000023Metagenome / Metatranscriptome5736Y
F000070Metagenome / Metatranscriptome2710N

Sequences

Protein IDFamilyRBSSequence
Ga0192869_100120941F000023N/AHGARKTTGSDAQILKKVSTRLQDFEAQITAQLSNMQSDFDKKLSHVNRGQSTMKPLDATGAAAGLDTMADLDQLKYDVGELKDLLSNNKGEVNHVRRIVLACERDMEDFTAAMDAVNVDLDEMRARVDATHSIITSRQRVEATMTAEISTMRLDIGDIQEALKNHDSWMEDVSNTLQQMQEKEENLTEDIINLKNEMNTKLDTKVDNVAWKEANDDLDAAIKTVRDMVSSLRLDVDARRRKVDEILATIRHDITAVETNLEESKAKIVSDTDQAVNALNGRIDFTNKDLAATQESLHTTQNSLSDCFNEVAVVRSDLERNIADTEARLKNDIRRSSRRHSRKLVL
Ga0192869_100120942F000070GGAGMSGVQGGLGEHKRDILKLREEVNGLTVKSASHEVDIQKNSDAVRKMEKQRNMDEQNWKAQMDAVHDVLDTKVNEKPFEDLKHCVASLTKGTVKFAQVVGVFPGPRFDDAEGLDQSEADVELLGWEECAENMSFRVDKAWRQRCSQRFRNILDMIAKS
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