NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181564_10322707

Scaffold Ga0181564_10322707


Overview

Basic Information
Taxon OID3300018876 Open in IMG/M
Scaffold IDGa0181564_10322707 Open in IMG/M
Source Dataset NameCoastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011513CT metaG (megahit assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)856
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.972Long. (o)-81.028Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F063692Metagenome / Metatranscriptome129N
F088282Metagenome / Metatranscriptome109N

Sequences

Protein IDFamilyRBSSequence
Ga0181564_103227071F063692AGTAGMKKLVGVVLVLVTLIVTVLFSQAQDKEQRLVNDRYMAACDFYFSGVVVDVANDFEVHRCMLRLELDTSTIANFDVRDTKAYYHAVIDGTDAEVIESIIYDHSELGQANFIKPGMRYTFDGQVDSAYLIFADTLVESWPIQISTFEL
Ga0181564_103227072F088282N/AESDRYLKSMNYAFGFNGPDIEEVYHLLSDVDGAIPTMIEDSYDGRRKTWRATSVFVSLALHSEGEKRMFYLDLANHISKGSDSYKTYAAVLLLEYIESIGSGAVEMRRIMLLAYVQAYEEEIGIEFAERIYALLVEK
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