Basic Information | |
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Taxon OID | 3300018868 Open in IMG/M |
Scaffold ID | Ga0187844_10012764 Open in IMG/M |
Source Dataset Name | Oligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - SP09_SKY_50 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 4540 |
Total Scaffold Genes | 8 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (50.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Bacillaceae → Priestia | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Wisconsin | |||||||
Coordinates | Lat. (o) | 46.008 | Long. (o) | -89.701 | Alt. (m) | Depth (m) | 0 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F014837 | Metagenome / Metatranscriptome | 259 | Y |
F058935 | Metagenome / Metatranscriptome | 134 | Y |
F067530 | Metagenome / Metatranscriptome | 125 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0187844_100127643 | F067530 | GAG | MQILTLNLDPATANALITALEVARRQGDFAVARTAVSIISELIRQDEEFKKLTPPVQAQTAE |
Ga0187844_100127646 | F014837 | N/A | MIQRNINPKPRFLTLIASVPSTGAFVGAPLGTLFKTSFFTFPQDSIVHYVSINSTFVANGAASQVIGAVVYNQGQDSIGYNLGVGVDNFGDGTIWRDELLNPAAGVLSADKSTQIMMNEFFCHTGSGIGIYVNGLSGNANINATISFNPIAEWINFREPTIGVRI |
Ga0187844_100127648 | F058935 | N/A | VLNLGVLEISFAQKLYYQIARPFIACPSWFGIDVQSLASSRTGNAAETQVPGTNWSARSDYRATAVYNIDPIQIIEPEIQIQAAINFPNGNTPNFTNTALDTANGTQTPAIELGLIFDGYVIRPSQ |
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