NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0187844_10012764

Scaffold Ga0187844_10012764


Overview

Basic Information
Taxon OID3300018868 Open in IMG/M
Scaffold IDGa0187844_10012764 Open in IMG/M
Source Dataset NameOligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - SP09_SKY_50
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4540
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Bacillaceae → Priestia(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)46.008Long. (o)-89.701Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014837Metagenome / Metatranscriptome259Y
F058935Metagenome / Metatranscriptome134Y
F067530Metagenome / Metatranscriptome125Y

Sequences

Protein IDFamilyRBSSequence
Ga0187844_100127643F067530GAGMQILTLNLDPATANALITALEVARRQGDFAVARTAVSIISELIRQDEEFKKLTPPVQAQTAE
Ga0187844_100127646F014837N/AMIQRNINPKPRFLTLIASVPSTGAFVGAPLGTLFKTSFFTFPQDSIVHYVSINSTFVANGAASQVIGAVVYNQGQDSIGYNLGVGVDNFGDGTIWRDELLNPAAGVLSADKSTQIMMNEFFCHTGSGIGIYVNGLSGNANINATISFNPIAEWINFREPTIGVRI
Ga0187844_100127648F058935N/AVLNLGVLEISFAQKLYYQIARPFIACPSWFGIDVQSLASSRTGNAAETQVPGTNWSARSDYRATAVYNIDPIQIIEPEIQIQAAINFPNGNTPNFTNTALDTANGTQTPAIELGLIFDGYVIRPSQ
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.