| Basic Information | |
|---|---|
| Taxon OID | 3300018868 Open in IMG/M |
| Scaffold ID | Ga0187844_10001146 Open in IMG/M |
| Source Dataset Name | Oligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - SP09_SKY_50 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 20481 |
| Total Scaffold Genes | 37 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 27 (72.97%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (83.33%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Wisconsin | |||||||
| Coordinates | Lat. (o) | 46.008 | Long. (o) | -89.701 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F005702 | Metagenome | 392 | Y |
| F005846 | Metagenome | 388 | Y |
| F007164 | Metagenome / Metatranscriptome | 356 | Y |
| F010463 | Metagenome | 303 | N |
| F011284 | Metagenome | 292 | N |
| F025739 | Metagenome / Metatranscriptome | 200 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0187844_1000114611 | F011284 | AGCAG | MTSEQGVEKTEEKVFTKKHDLHLTTLQMAAVESMERKYKKGVVENCGTKLWEMPTARLVEEAIAEATDQMVYLLTLRQQMHIVMELARDGCTDETLTNPRARECCNLIYTTLTGQSKPL |
| Ga0187844_1000114614 | F005846 | N/A | MTSFHLPARPQASTVPASHIEFKKDTAIEGKANGWRGLFDQETKQGYNRHGKFASNHNLMAERILGAGIKSRFVDCEIMGQRTRTGKGTIVVMDAFDPANPKPYAERMKEIEHIEAVTFDVPQNKLLRFVQLAHHKINSIWEEMNFQNNKAGEVIWEGFVMKALDDGKYPYITNPNYCSPSWQKQRIRW |
| Ga0187844_1000114615 | F005702 | GAGG | VIIFLVAFFGLLILQGVRIFAKHIDQQNYERRKFYLFVAAELDKMDKIVAEGNQPKEPKQPELVLPSKNWVGRN |
| Ga0187844_1000114623 | F010463 | AGGCGG | VNDLVLAATIHRVKCCEEKIAQFEQLISTLTAQMAHNRTELASKGLANLVMGTTTPLDIPRELRPTFGKYRARGNRSHNTVQKRWGIWKAQYESGLTVKEIANAWGCHHSSIVNAKSKNFTARKSSGRAIK |
| Ga0187844_1000114630 | F007164 | AGGA | MSEKQIGMELQRTVKALEKAKETAIEQMGQAIGLAADAGDILLSARTEGLDLDAIQDIAQINGEQARRYERVAKARPSLQAPTPGGLKQLALWTGLLPDPIETSNPKAEQAWHSYIIKARQWLARKSPTQWTPAQKTQFLEEARPIVEAYKEAGGEL |
| Ga0187844_100011469 | F025739 | AGGA | MKKLLTTAVYEMRKWILGFTAASLICGCATTRPYDIGEVPNQDSITDYIMRWDKLDRTKATPEEYRQLFGQSLKTISRLVEENERLRKRLDQ |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |