NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0192970_1032729

Scaffold Ga0192970_1032729


Overview

Basic Information
Taxon OID3300018848 Open in IMG/M
Scaffold IDGa0192970_1032729 Open in IMG/M
Source Dataset NameMetatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_084 - TARA_N000001442 (ERX1789421-ERR1719148)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterCanada's Michael Smith Genome Sciences Centre
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)974
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Sporadotrichida → Halteriidae → Halteria → Halteria grandinella(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameAtlantic Ocean: TARA_084
CoordinatesLat. (o)-60.3046Long. (o)-60.5715Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020793Metagenome / Metatranscriptome222Y
F044532Metagenome / Metatranscriptome154Y

Sequences

Protein IDFamilyRBSSequence
Ga0192970_10327291F020793N/AMTLIPNMMPKGCYREVRKYQECAATIGKEISQCINQKISIMEVCPDHVLEGLREKKKHMLRAEVIDNETYRRAMQVSDFNRERSVSGLQLKTWEHGAANNLRSDSLYQDDRYDPTKFSHAHRYDNVNFPE
Ga0192970_10327292F044532N/AFYSSNFPEYYYQKPHYDLGNAIIHSDVYKKLNPIRARYDYKANDYTQMPFYLGVVPQFFWLYGNLDYSFNKYHKHYQAHDDWHVDGKNKTLGAK

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