NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187842_1030075

Scaffold Ga0187842_1030075


Overview

Basic Information
Taxon OID3300018790 Open in IMG/M
Scaffold IDGa0187842_1030075 Open in IMG/M
Source Dataset NameOligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - SP09_SKY_41
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1759
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)46.008Long. (o)-89.701Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F046819Metagenome / Metatranscriptome150N
F047479Metagenome / Metatranscriptome149N

Sequences

Protein IDFamilyRBSSequence
Ga0187842_10300753F047479AGGAGGMKNKTNQHLHIDLYNGKSKWISESVFLNYTVGTNFDGRDSKGYFMTYKLEDGTVEKEYYNWKDNWEYIKRTETHTVYKGEECILIDFSNKNLRG
Ga0187842_10300754F046819AGGAGGMNNFQPYTQTDVVSFYKELVKRWADDQLDQLHEYPITDRKNALGRLIDSSLDVFRDDIEEEIRKRNLSFLVD

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