NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181591_10044834

Scaffold Ga0181591_10044834


Overview

Basic Information
Taxon OID3300018424 Open in IMG/M
Scaffold IDGa0181591_10044834 Open in IMG/M
Source Dataset NameCoastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071412AT metaG (megahit assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3727
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.972Long. (o)-81.028Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002188Metagenome / Metatranscriptome585Y
F041862Metagenome / Metatranscriptome159Y

Sequences

Protein IDFamilyRBSSequence
Ga0181591_100448341F041862N/AFRVKIDNFDNTTEVSEGSQRIVRTNFTMAVNAYLLPEQFDNESTHKKSISPKKVVWGLETDLTGLDGGNVTNSTLKKNLINEYSDAIDFLSVRGSKQGSFVDADTMKITSVEQPKLPPELIGTFNEDEWYRVYINGVFIPKTKYNVVYQDDTDEIYFNFSTGSVSVGGVYPDDLQSTSNDLGYILENDDEFGVTGKFIEL
Ga0181591_100448342F002188N/AMAIKDLVRILTQVHEPDEYRLSAHDMNHSLYWIWKLNDGKLKDLDLELRSFRPEHARFDIFINGQYVLENDYIFEHSGSKLLIKFKKANFDYNLEESDDIKIEGDIQVGXVQNQNQM
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