NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0190265_10446767

Scaffold Ga0190265_10446767


Overview

Basic Information
Taxon OID3300018422 Open in IMG/M
Scaffold IDGa0190265_10446767 Open in IMG/M
Source Dataset NamePopulus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 124 T
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1399
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Populus Soil Microbial Communities From Riparian Zone Of Different River Systems In The Western United States

Source Dataset Sampling Location
Location NameUSA: Utah
CoordinatesLat. (o)37.9813Long. (o)-109.5168Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003507Metagenome / Metatranscriptome482Y
F081910Metagenome / Metatranscriptome114Y

Sequences

Protein IDFamilyRBSSequence
Ga0190265_104467671F003507N/ATDVAVMYACGIETVQLDSPQAPFVLPETLAQFRRRLDEALIDEWLAIQAATAMDDGLVSPAHLLVDTFPAEQGSQRVTDANTLYKAQKKSSSSSTPSRSSVALDPPRSSDR
Ga0190265_104467672F081910GAGMRGFGRQCRGQAKVFVKLVRQTETQLLEVGSSIAELAQQAQQTLDTAPDLSASTRARLAHDLNTAIETHHQISKQSRRLTQGKRLSHCKIVNAYDLTIAPILKGKSNCPAQFGRKPGIVSEPTAGFIFAARSPIGNPSDATYVIPLLDNVQQAIDRLRGPKRPAIHSLAGDLGVNDPVLRQALHERGILTVGIPETIKPINPAPSPEAILAALNKAGLNRQRTPYQVQLACACGYSRPVIESHIACFLSRGAGQIRYKGPQGAVVQLGMTVMAHNGAALVRIRQQRLSKRAQKFRRLLGLRGHNINQINDPKN
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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