NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0190265_10188220

Scaffold Ga0190265_10188220


Overview

Basic Information
Taxon OID3300018422 Open in IMG/M
Scaffold IDGa0190265_10188220 Open in IMG/M
Source Dataset NamePopulus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 124 T
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2062
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Populus Soil Microbial Communities From Riparian Zone Of Different River Systems In The Western United States

Source Dataset Sampling Location
Location NameUSA: Utah
CoordinatesLat. (o)37.9813Long. (o)-109.5168Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F030005Metagenome186Y
F032987Metagenome / Metatranscriptome178Y

Sequences

Protein IDFamilyRBSSequence
Ga0190265_101882204F030005GGALKYRVSDVAGWFIIGPSGIAENNEPLRVRYLFRRRLSRDGIKLIVDLKELNQFGVWEVGLLTSFKREVDQRAGILRICGLDPNLSGYFQHDRFAGQFDIYADLESAMTGKRN
Ga0190265_101882205F032987AGGAGMARGQTKSTTAKIFDNILFLEEVFGDLAERDIPKLPVLEMAQCFDLEISSPSRAGRRRSKAWRLWK

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