| Basic Information | |
|---|---|
| Taxon OID | 3300018422 Open in IMG/M |
| Scaffold ID | Ga0190265_10110218 Open in IMG/M |
| Source Dataset Name | Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 124 T |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 2604 |
| Total Scaffold Genes | 5 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (100.00%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Populus Soil Microbial Communities From Riparian Zone Of Different River Systems In The Western United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Utah | |||||||
| Coordinates | Lat. (o) | 37.9813 | Long. (o) | -109.5168 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F024928 | Metagenome | 204 | N |
| F073736 | Metagenome | 120 | Y |
| F080641 | Metagenome | 115 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0190265_101102182 | F080641 | AGG | VTVRALAELGQGARGRIVELRLPPGRRTLPSSPLQPGATVYVAEATGGRWLHVRIDYREYSIPLGVAEGVLIEVPERSQPPSATDAYALLVSRLDRRSWRVRVIDRASGVVARSEWFEEEAAARRRHAELSADAAALDAAAFRARYRLP |
| Ga0190265_101102183 | F024928 | AGGTGG | VIARVLCATAQSEQAALTMAALWGEQVGRFERTAPGFQGAVLLREGSRLLAVSCWDEKGPAEAALAPLLDRMASSELDALLAEPMSCRFRTL |
| Ga0190265_101102184 | F073736 | GGAGG | VPTSDLPPQRPGRDPGGRVAYLPPRAAKARKLILRSQLGRGWIVASALFGLVILVAGVLFLARDGHPGPPWVRVAPLSSLPDGAVTEAPGPAGQVVVVDRRDGELRAFLAPPGPCPVRAAGSGFGRPCAGHRWDRAGAPASNLRDGQEAPPPLRPVPASFAGGALYVNPG |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |