NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0190265_10052049

Scaffold Ga0190265_10052049


Overview

Basic Information
Taxon OID3300018422 Open in IMG/M
Scaffold IDGa0190265_10052049 Open in IMG/M
Source Dataset NamePopulus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 124 T
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3577
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (77.78%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Populus Soil Microbial Communities From Riparian Zone Of Different River Systems In The Western United States

Source Dataset Sampling Location
Location NameUSA: Utah
CoordinatesLat. (o)37.9813Long. (o)-109.5168Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008142Metagenome / Metatranscriptome338Y
F016892Metagenome / Metatranscriptome244Y
F057963Metagenome / Metatranscriptome135Y
F075145Metagenome119Y

Sequences

Protein IDFamilyRBSSequence
Ga0190265_100520492F057963GGTGGMRCFLGWLKGRASAVTGFVAVLALVSLPVELRVGFVEHPVIAPAPVASMLLIGSCLLLVGSGLGLRRLEAARAGARRPTPGL
Ga0190265_100520493F075145AGGMLDTGGRARLLHVAIWLATLFFTAMLFVPLLREALRRVTEVPSGGPF
Ga0190265_100520495F016892GGAMQWLSSRSVATVWLLAALSLVGWLIVNLDVAGWIILVVTVGLMAFELTRRRDGQGTRHKARVSDDSTG
Ga0190265_100520498F008142AGGGGGMKRSVLTLALAWILWAHETAQVGDKLIDRGYTAIDSFETRQLCHAAMTDYAALKLVRLGKVRVEFSCLPEKTNPRGPRTAVG
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