NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0190265_10023609

Scaffold Ga0190265_10023609


Overview

Basic Information
Taxon OID3300018422 Open in IMG/M
Scaffold IDGa0190265_10023609 Open in IMG/M
Source Dataset NamePopulus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 124 T
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4962
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (60.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Populus Soil Microbial Communities From Riparian Zone Of Different River Systems In The Western United States

Source Dataset Sampling Location
Location NameUSA: Utah
CoordinatesLat. (o)37.9813Long. (o)-109.5168Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005073Metagenome / Metatranscriptome413Y
F028452Metagenome / Metatranscriptome191Y
F063445Metagenome / Metatranscriptome129Y

Sequences

Protein IDFamilyRBSSequence
Ga0190265_100236093F063445GAGMHIALQGALWGLGLGVFLVYIEYTFVKKGVVERAVQKHRKPEFEGQDRNRIRAVVTFALCLPPAFALGAWLIWG
Ga0190265_100236097F028452N/AMANIQVVKDECPLAPAPRVTVYTRVLHRACQILGGVNELAAYLHVSPGVVHRWLEGEDLPPSNIFLRTVDLVLPTWGPEDDAFARAVAASKPEKS
Ga0190265_100236099F005073AGGMGDSLFTVFIGVAVAGLIGLFLYGWMRRKEKPPPGVKPLKDEDDWK
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