| Basic Information | |
|---|---|
| Taxon OID | 3300018416 Open in IMG/M |
| Scaffold ID | Ga0181553_10018118 Open in IMG/M |
| Source Dataset Name | Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011502XT metaG (megahit assembly) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 5303 |
| Total Scaffold Genes | 12 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (25.00%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Georgia | |||||||
| Coordinates | Lat. (o) | 31.972 | Long. (o) | -81.028 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F010650 | Metagenome / Metatranscriptome | 301 | Y |
| F012872 | Metagenome / Metatranscriptome | 276 | Y |
| F013704 | Metagenome / Metatranscriptome | 269 | Y |
| F014505 | Metagenome / Metatranscriptome | 262 | Y |
| F016957 | Metagenome / Metatranscriptome | 243 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0181553_1001811811 | F010650 | N/A | MKEMNQFLRIANARLKKIYPNKQQRRAWAAKMYVRWVRRKQN |
| Ga0181553_100181182 | F012872 | N/A | MNLHFEGNKLYYMEKEAELFRALDHLSKYLGNQADLTDDQIWEIFHICADSAAVYRHITDYFNVLDRKILEARIDNGKLKQELYDLKKENIKLHQIVNDHIDGF |
| Ga0181553_100181183 | F013704 | N/A | MDFKRKMNNGQRFEINGMEFICMETTIALQTRVDGEEPDIEVSGSYYIVRNTSTGSLHKIPFQKIIDKEKEIKWKI |
| Ga0181553_100181185 | F014505 | N/A | MDRIGKFYEKNFKRLTGFIKEYTDGSYEIASDIVQMVFVRLLEMESEGRTNFYEEDSLNFFYVYRACINTALKYQRAKKKINKVSIEDLHFDFHLDQPYTEEREAMEKLLDKMENEIEDLHWYDQKMINIHMNGTSMNKLHRETEIGLTSIKNTIKNGKARIYDKLKEDWQDYENGDFDK |
| Ga0181553_100181187 | F016957 | N/A | MQLRNYLKDKRKLTESRTKVCVDVGKTGEALFKELTGALKSNLEDDKKHIDFYWGDKLVDVKGLKKMHLSGYILLEFVNVWGGNGWCSRKSKAEYIAFQFPEAFYVFRKNHLRLRAIELCEPFYKDKVERRNYIPYKDALHRWVGRWNAQDVFTYLRFEDVEDLIFEVLPYAVTNEESK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |