| Basic Information | |
|---|---|
| Taxon OID | 3300018088 Open in IMG/M |
| Scaffold ID | Ga0187771_10163880 Open in IMG/M |
| Source Dataset Name | Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_10_MG |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 1833 |
| Total Scaffold Genes | 3 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium SCN 57-15 | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland → Tropical Peatland Microbial Communities From Different Locations |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Colombia: Department of Meta | |||||||
| Coordinates | Lat. (o) | 4.0627 | Long. (o) | -73.195 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F046997 | Metagenome | 150 | N |
| F055381 | Metagenome | 138 | N |
| F058854 | Metagenome | 134 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0187771_101638801 | F046997 | N/A | QDLTVFTTFAYRTLSSIGCSLALSAAPSPVTVGDVRTERDSIPRALAQDKAEAIAIFRASQQPLLWLRAMSGISCIENKLQSTPTNAPAETRALLLTLGDKKLTLHADVWKKSYTACRPTNGLPLYVDKNRRQAPETYVDPEILKGGVNILTLKGTNQVPACLSGEALENYLQLRCDQKLQPGDYWRELHARKLDDEQLARLRYYDYLDTHVALRSVPIYQSTEIRSRNH |
| Ga0187771_101638802 | F058854 | GGA | MWLCVLCLFTRARKSEAEIIDHLNARWQGCAWQANRLELSGLTYQGALFPLITQGPGAFSLPSGAFVLRLHVLPLNARDNEPILVLWGRIADPRDKPLAKLFLRKGRLVWICPIDAKADSLFDAPKEVELETRELTPGLWATVDVLINPMPYQQTFGWSLEVNHPQDPAKPSGKPLHLARQLTSADWTLQKIEMPRLHAAWLGQMELLPADTPPAQLRPNILRQ |
| Ga0187771_101638803 | F055381 | N/A | MKLLLKLLFILPALAAAGSSIREVYLPPWYDNASFQTFELEIRDLPVHCVQLEHPCTLFCTNQVVVVSNGIARARLLIDLKKTPATFPIIVLAPDANGRMTPCQRLICHLSLVAQPIQVEVRGDTFTVTNLTEEPFELEHTEAVNITSQDDRHIAGTLNGSGRLKLKGRAEIRLNR |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |