| Basic Information | |
|---|---|
| Taxon OID | 3300018086 Open in IMG/M |
| Scaffold ID | Ga0187769_10319359 Open in IMG/M |
| Source Dataset Name | Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_10_MG |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 1162 |
| Total Scaffold Genes | 4 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
| Novel Protein Genes | 2 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 2 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium SCN 57-15 | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland → Tropical Peatland Microbial Communities From Different Locations |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Colombia: Department of Meta | |||||||
| Coordinates | Lat. (o) | 4.0627 | Long. (o) | -73.195 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F045053 | Metagenome / Metatranscriptome | 153 | N |
| F052500 | Metagenome | 142 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0187769_103193592 | F045053 | N/A | MTTVASYRIPGFGTVDVVQQNDGRNRFWDLFAASGECLNEGHPFWSEPRRKQVETFLAHHLKEALARIERECERIKITQEDLDEVIHEAAQAGNRRLNQVSEEKQQERLITTAEEQAARVNNGGRASQLIYLLEAYGEAGAVKALQDRHETNG |
| Ga0187769_103193594 | F052500 | N/A | DGYGSFNLFIALRNRLEGHHYLSRRIEFEIPLHGLMARITRIIERHGARLEWHEPPRRQYARPGDGKKLFEGYNTDSYKVSVHIPQPAEEAQRQRETQLAFA |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |