Scaffold Ga0187769_10001964

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0187769_10001964

Scaffold Ga0187769_10001964

Overview

Basic Information
Taxon OID	3300018086 Open in IMG/M
Scaffold ID	Ga0187769_10001964 Open in IMG/M
Source Dataset Name	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_10_MG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	11916
Total Scaffold Genes	17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	12 (70.59%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location
Location Name	Colombia: Department of Meta
Coordinates	Lat. (^o)	4.0627	Long. (^o)	-73.195	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F062979	Metagenome	130	Y
F064147	Metagenome / Metatranscriptome	129	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0187769_100019643	F062979	AGGAG	MVVLSPSPVSGPFPVSGPPAPIATSSTLVNQVSIKPRLGQWSKILIGGPNLGTDESNAMAILYPVPNGGQADAFTVQDQGGQNTIDLSQIYVYATIPGDTPMVEAFGYQTV
Ga0187769_100019644	F064147	N/A	MNRRELIQKALGVGAAAFAVSQLRAQSAGSQYNGPAGGTRGSQLVTILTGPFDTSSQPNGVAPLAAAPQYATYVRIQAHPGQEGKIAIGGPAMASGSSNIADSAFLELWPNWDASFDNGRSDTWILSDPKWLNTIDLSQIYVYPEIAGETPIVTAFQLV

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