NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187772_10014754

Scaffold Ga0187772_10014754


Overview

Basic Information
Taxon OID3300018085 Open in IMG/M
Scaffold IDGa0187772_10014754 Open in IMG/M
Source Dataset NameTropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_20_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4356
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location
Location NameColombia: Department of Meta
CoordinatesLat. (o)4.0627Long. (o)-73.195Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009018Metagenome / Metatranscriptome324Y
F018229Metagenome / Metatranscriptome236Y

Sequences

Protein IDFamilyRBSSequence
Ga0187772_100147541F009018GGAGGMTTYIRKFIATALAIASVALTTSAAMAQSYTGDWPATVTQSQRDNGTYCVSLTDDGSYGFPHSGEAALIPNNSPYPGYFTVIDGVITVTITYPSGAGECCSFFVFTAHANNGHISKGVFNYFGLTDIGLVSFGKKDGCSN
Ga0187772_100147543F018229AGGVAYSSGHLMCRTSLWGVAGFLGCAYFTWVSFSHVLHSEFVWPHDAWTAATYGVWIILLLILAFDTRCWRERLFFGVLVINFLVGFGMTLWRGIAVADVRAARIATGALWALAGILSLLTVGREKRVSG
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