NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0184612_10261986

Scaffold Ga0184612_10261986


Overview

Basic Information
Taxon OID3300018078 Open in IMG/M
Scaffold IDGa0184612_10261986 Open in IMG/M
Source Dataset NameGroundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_60_coex
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)891
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location NameUSA: East River, Colorado
CoordinatesLat. (o)38.9195Long. (o)-106.9496Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005802Metagenome390Y
F020437Metagenome / Metatranscriptome224Y

Sequences

Protein IDFamilyRBSSequence
Ga0184612_102619861F005802N/AGLMPDPNDIPRRRGRLVLDVTQAAAEVSRLVHEAHDLNLPVEPGVRDGRNALVRWAVFLEEVLP
Ga0184612_102619862F020437AGGAGGMTEPHKLTDPVPVGVLTAVTTAIAVLEIQGPAITEALRQLDRATTMAWKAVNMVGVTDEEWELVKRELGIERAWDAAYQLVSSFDLPSMQPSADVTADGP

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