NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0184624_10006561

Scaffold Ga0184624_10006561


Overview

Basic Information
Taxon OID3300018073 Open in IMG/M
Scaffold IDGa0184624_10006561 Open in IMG/M
Source Dataset NameGroundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_b1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3847
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location NameUSA: East River, Colorado
CoordinatesLat. (o)38.9195Long. (o)-106.9496Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001331Metagenome / Metatranscriptome721Y
F002439Metagenome / Metatranscriptome559Y

Sequences

Protein IDFamilyRBSSequence
Ga0184624_100065611F002439GGAGGMRVCAECGGELEAAYRFCPWCAAPQRRKLVEFFRAHPRDEGRALRVSRYLTEDPHVRFSVWSARGVAEAAASLEEQEAERLAAFLATPRPRARAVDRLLALLPRG
Ga0184624_100065613F001331AGGAGMRRQLVYLALLALTVLTVGVSSTLAAGRGMTTYLFNGRLLADAGSSPTLYVDVNGGSRLALKKLIGQGDDQKFAVDANTQFLRWTHGVPTVVPESNLVAGDRVSVRIRAARSASLPEIEATPAKVVADSGPSPRFAHRPLWLFIGSLDARAANGHVTLHIANGNLRGLRAMLGQPVDQTFSYDRHTIFVLWQGRVPTLISPSQLKVGDRISVRIRAPGNSSLAQVEQVPANHVGDHEPGA
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