NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0184637_10030152

Scaffold Ga0184637_10030152


Overview

Basic Information
Taxon OID3300018063 Open in IMG/M
Scaffold IDGa0184637_10030152 Open in IMG/M
Source Dataset NameGroundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_127_b2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3281
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location NameUSA: East River, Colorado
CoordinatesLat. (o)38.9195Long. (o)-106.9496Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002666Metagenome / Metatranscriptome539Y
F003507Metagenome / Metatranscriptome482Y
F009760Metagenome / Metatranscriptome313Y

Sequences

Protein IDFamilyRBSSequence
Ga0184637_100301522F002666GAGGVFVKLVRQTEQQLLESGHQVLPLARVAQERLRSALHRAEDHRARLDTTLKEAIEAHQRIEKQSQRLTHGKPLTHGKIVKAYDPTIAPMCKGTRNCPAQFGRKPGSIAEPASGFIFALHLPVGNPSDSSSVLPLVDKVQHAITPVRGRPTPAIHSLAGDLALNATAWREALHARGILTVGIPQTVEPIAPSPTQEDVHSILHQAGLNSKRTPHQVHIACACGYSRPVVESFIESLLCRGATHIRYKGHHGAIVHMSMTVMAHNAATLGRMQRNQLSKRAQKLRRLLGLKSRNINQFNVSKN
Ga0184637_100301523F003507GGAMDACGITEVQVERAQGHFVLPEVLAQFRGRLDETLMEELLSIQATAAMEAGLVSPAHLVVDTFPSEQGSQRVNDAATL
Ga0184637_100301524F009760AGGAGMRLLRHLQHWLTGRGPHICVADFVPETHPLRQWADTFPWAALVAAVDRSVAQRFPTQTTRGRAPIATRVLLALELLKHELSCSDEQICSR
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