NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0184619_10345210

Scaffold Ga0184619_10345210


Overview

Basic Information
Taxon OID3300018061 Open in IMG/M
Scaffold IDGa0184619_10345210 Open in IMG/M
Source Dataset NameGroundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_b1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)679
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location NameUSA: East River, Colorado
CoordinatesLat. (o)38.9195Long. (o)-106.9496Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000280Metagenome / Metatranscriptome1383Y
F001935Metagenome / Metatranscriptome615Y
F033892Metagenome / Metatranscriptome176Y

Sequences

Protein IDFamilyRBSSequence
Ga0184619_103452101F033892N/ATPEQLEAFLERGYTFERMLDDVAGIQAERPHLMEKIF
Ga0184619_103452102F000280GGAGMAEEPRPARPLVGYRDVGEDVRHSRPQIVRAWLILAFLIVLYIGWTLTVYFLEPGLR
Ga0184619_103452103F001935AGGCGGVYLKHLSSLQFLTYVSFFAVVVAALFKFVPGRSPPVREDPYPDDELHAHDPKVAKYFLAGGLFLVLGSVHMAVKNFPWAAEYLARTGYAGHLVRDLSNTHVMIVGGGTLLATGLCWLALPRIVRRP
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