| Basic Information | |
|---|---|
| Taxon OID | 3300018052 Open in IMG/M |
| Scaffold ID | Ga0184638_1027550 Open in IMG/M |
| Source Dataset Name | Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_50_b2 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 2037 |
| Total Scaffold Genes | 6 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (66.67%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment → Soil And Sediment Microbial Communities From The East River, Co, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: East River, Colorado | |||||||
| Coordinates | Lat. (o) | 38.9195 | Long. (o) | -106.9496 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F016892 | Metagenome / Metatranscriptome | 244 | Y |
| F057963 | Metagenome / Metatranscriptome | 135 | Y |
| F075145 | Metagenome | 119 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0184638_10275502 | F057963 | N/A | MRQLPRVLKGRASAVTGLIAGLALVSLPVEITLRFVEHPVVAPAPVVSLLLIGSCLLLVGSGLGLRRLETVRAGAQRPTPGV |
| Ga0184638_10275503 | F075145 | AGG | MLDTGGRARLLHVAIWLATLFFTAMLFVPLLREALRRVTELPSGGPF |
| Ga0184638_10275505 | F016892 | GGA | MQWLSSRSVATVWLLAALSLVGWLIVNLDVAGWIILVVTVGLMAFELTRKRDGPGARRKARVPDEPTG |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |