NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181606_10244971

Scaffold Ga0181606_10244971


Overview

Basic Information
Taxon OID3300018048 Open in IMG/M
Scaffold IDGa0181606_10244971 Open in IMG/M
Source Dataset NameCoastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041412US metaG (megahit assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1016
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.972Long. (o)-81.028Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015079Metagenome257Y
F057327Metagenome / Metatranscriptome136N
F090273Metagenome / Metatranscriptome108N

Sequences

Protein IDFamilyRBSSequence
Ga0181606_102449711F015079N/ATFEIAFADGTVGEANSKTAEPPYKVGDEVYYEVQRENQYGKKLKISKNPPIPGGFPAPNPNKDKQIIRGMCLKLAGMAWANQYKHKEFATPHEVLVKDVIMLAKKYETAFNEWMNE
Ga0181606_102449712F057327N/AMRTDIPHEERVTRIMFLQEFRRNLYKGRAEKELNNRQVLQYDREIRQVKYALKKLDPDGIFGP
Ga0181606_102449713F090273N/AMKYWFETEDAERFGLVAASVLAHLKYWIDRNTSAGEEPCMTQSISKMQGHLSFLTFDQIRRALSKLEKEGAIYRQGNGFDRRHTYCLSEMPQGRGEIATTMGQDCHNDVAPLPQVHIETNTSNITSKSA
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