NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187887_10288032

Scaffold Ga0187887_10288032


Overview

Basic Information
Taxon OID3300018043 Open in IMG/M
Scaffold IDGa0187887_10288032 Open in IMG/M
Source Dataset NamePeatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_7_10
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)971
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F047839Metagenome149Y
F056764Metagenome / Metatranscriptome137Y

Sequences

Protein IDFamilyRBSSequence
Ga0187887_102880321F047839GGAMALDPETQTKLQIFMAVAIVIAGARAAYIVYQRHEAMKEASKPKQETALNADYYVTPKKLHAYDLKSAQQLAEQPVWVKVGYQLTYYPYDPKRHKTDFAH
Ga0187887_102880323F056764N/AASEYPREFKRIREELPSYARQATRYLDLAIKVGRKIEQLAEGRAALAFEELGEF

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