NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0181601_10317461

Scaffold Ga0181601_10317461


Overview

Basic Information
Taxon OID3300018041 Open in IMG/M
Scaffold IDGa0181601_10317461 Open in IMG/M
Source Dataset NameCoastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041407BS metaG (megahit assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)857
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.972Long. (o)-81.028Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001166Metagenome / Metatranscriptome760Y
F019641Metagenome / Metatranscriptome228N
F034161Metagenome / Metatranscriptome175N

Sequences

Protein IDFamilyRBSSequence
Ga0181601_103174611F034161N/ATSTMPFKSMQELARAQSDPRYKSGDKAYHEEIDRRLSVSNI
Ga0181601_103174612F001166AGGMFKNMATELGDNVQVKANLAFMAKVIAIVGTCVWGYSVVWNKLMVLDSSLDRVQHEGTLLGDLSARMMHIEKFAEQSKADLNHLLEMQDAPITSDHQQFERIRYLEKEVDRLRAKFDNMMYIAR
Ga0181601_103174613F019641GAGGMGELLMLFITGGGSTAMGAILKGVFGYIFEAKQNKHDLEMAREARASDNFLRLQAEISKGGTGEFVSFTRRILAVIGVSTLCACIILCTLFP
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.