NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187862_10288875

Scaffold Ga0187862_10288875


Overview

Basic Information
Taxon OID3300018040 Open in IMG/M
Scaffold IDGa0187862_10288875 Open in IMG/M
Source Dataset NamePeatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_150
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1039
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004185Metagenome / Metatranscriptome449Y
F015081Metagenome257Y
F071728Metagenome / Metatranscriptome122Y

Sequences

Protein IDFamilyRBSSequence
Ga0187862_102888751F071728GAGMNKPDRADLRQANVRVSGITFESVRLRRRCGSGDFDILIDDPHVGRFALTPAVPNLELRDEDSDWRQVELDELKKLLADDGELADAAEEPQVSEAAERESFNRLVAEGEHIMNAEIALFR
Ga0187862_102888752F015081GGAGVECLIEEQRRLSASTNPFERVVGSLFIGAILKKQLVGLPNTAISQLLTDQIWSQLNLLGPESVIVEIASERLIEKHKISLVCPRCGAEL
Ga0187862_102888753F004185GGAGGMSLEKEFIRDGKRRIIGSIITGYVGSFDTLVRDEDAHIIGRTSESFGTTRDEHGKLVSINTADPGLLIGRK
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