| Basic Information | |
|---|---|
| Taxon OID | 3300018033 Open in IMG/M |
| Scaffold ID | Ga0187867_10045820 Open in IMG/M |
| Source Dataset Name | Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_13_10 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 2648 |
| Total Scaffold Genes | 6 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (16.67%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium SCN 57-15 | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Minnesota | |||||||
| Coordinates | Lat. (o) | 47.5028 | Long. (o) | -93.4828 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F045016 | Metagenome | 153 | N |
| F045053 | Metagenome / Metatranscriptome | 153 | N |
| F052500 | Metagenome | 142 | N |
| F091215 | Metagenome | 107 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0187867_100458202 | F045016 | N/A | MGKRPTRGNVRRGAGVGKKEAMTLAIAQPPGVTGASLVNAACRKYQEAVDKFKRVEAEWQTLPTQEAVMLVVETQGILRETRQLLNQGTSQMTGMNSPEWGEATGQTTRDEVAECLQDAHDLGNRVDDLLVGCDRLIETCLAHQETCERYQTGKALCIVVAVAIFTIGVALYFLLR |
| Ga0187867_100458203 | F052500 | N/A | MTTQAQRHRASEIAGEITKLQGIKSAVVDDDNGYGSFNLFIELRNRLEGHYHLSRRIEFEIPLHGLMARITRIIERHGARLEWHEPPRRQYARPGHGKKLFEGYSTDSYKVSVHIPQPAEEVQRQREMQLAFA |
| Ga0187867_100458205 | F045053 | N/A | MTTVASYHIPGFGTVDVVQQNDGRNRFWDLFAASGECLNEGHPFWSKPRRKQVVTFLAQDLKEALARIESECERIKITQEDLDEVIHEAAQAGNRTLNQVSEEKQQERLITTAEEQAARVNNGGRASQLVHLLEAYGEAGAVKALQDRHETNG |
| Ga0187867_100458206 | F091215 | AGG | MRPTADETIRFYREDGAYVLVHDGTLDGGANLRYVIRLIEREMQLKLKSLGYFGQGTHSQERFHSGQPIDEHAFARRTRQLLRLPLAALATCLMAKGVLGPKPGEPAFENLNEKTGAATLKEWAISYYEANEITCPGSLNVLKRNRLFRWRRIPFEYLRHNLQSSYEIPVKVECYRQLLGKGHPLPPLICRRRGWDLLEGYHRLSAHEKVGSQTIPCVMIGRS |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |