NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0187874_10048789

Scaffold Ga0187874_10048789


Overview

Basic Information
Taxon OID3300018019 Open in IMG/M
Scaffold IDGa0187874_10048789 Open in IMG/M
Source Dataset NamePeatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_150
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1974
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F053027Metagenome141N
F057847Metagenome135N
F096456Metagenome104N

Sequences

Protein IDFamilyRBSSequence
Ga0187874_100487891F096456N/AINEEIVAANRTTALFTMEIPKEQLRPGSRPTYLNLKGSAGLSFDAKANCGVYNQLQDWCDVPSNVDIWWESSDWMETVTNPDGVQARIAIRKPIVEVIVDKNKITGTKGTIFYRLEDKSGRMVECSDREQQEYRSKLAEAAVARDKADKSAKGALAGSRAPYRSKL
Ga0187874_100487893F053027AGGMTTLTEREIELHLKCPMFGVGLHQPSPFECAQKLLRWAVLDAFKGRLVPVTTLRGKFESIWNGHTAGWAPDHQPAYYAGLRAGNTAARKTFLFLQHYEVLKPVEAYGVDLAGDRIEGEYAVVLRRHDRRTDERPMILHAHEWRPAYCQQPGAIELIRYVHLMGATDYTSPGVYHLPLFRGEPWKMKDFDLPLVRKAVASILNAVRNTDHPVPGSHCEDCIGKRCRSLAHA
Ga0187874_100487894F057847AGGAGMPETLPVFMKGERKPINCFRDAEGFLVIDAVIGDDDLTVVSPDSGEERFRITDGEVIDLRPHEHEWAIDHGLCTVCNKSKQQINEEQDEQTHPTAPKGSLPVGRSQRT
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.