NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187874_10039481

Scaffold Ga0187874_10039481


Overview

Basic Information
Taxon OID3300018019 Open in IMG/M
Scaffold IDGa0187874_10039481 Open in IMG/M
Source Dataset NamePeatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_150
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2264
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003859Metagenome464Y
F016632Metagenome / Metatranscriptome245Y
F027079Metagenome / Metatranscriptome195Y
F028392Metagenome191Y

Sequences

Protein IDFamilyRBSSequence
Ga0187874_100394812F028392AGGAMPKTIAVVKLPEILRKGSSHLVKLAGKIDSFSLVLQRTPECQLKHQVEKEYHAMVFATRKEVRKYCPKYRYFSGEGILDFSTDCASGQLEPGDLGKPPQPKRGKLCHQCCFFLGEPEEQVAGIAVTGSPRHLAPAN
Ga0187874_100394813F003859AGGAGMDELNSQREASRCGMTVAAYLRPVTGLYKSVKLGWNWRRLRWAVAAASEAAQGHEANGVRPGSQEFKTLYNEVAKKLQEYSHESDDPIDTLKTKLPAFCAMERLAHPDPVTPQNRLGLTLGILVAGVVGSIGIGVLIGLGTGMAHWIAHLFG
Ga0187874_100394814F016632AGGAGGLTGILETFALVEVGSAIGFLANWRNKVLKTKVNFFRQPNNRPSPFDKVLRGKVGRAVTRQDRLRLQLADGLVNLIRKLVQYEAFRQVVRGLALAHSPMRQALRKKGGRPW
Ga0187874_100394815F027079AGGAGGVIKSFLNLCLILFLDMLAYMVAIVAAAAVAWAAVRGAKWVFAALQNVVTALKARQRKKEMHAHATR
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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