NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187873_1013794

Scaffold Ga0187873_1013794


Overview

Basic Information
Taxon OID3300018013 Open in IMG/M
Scaffold IDGa0187873_1013794 Open in IMG/M
Source Dataset NamePeatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_100
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4526
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020225Metagenome / Metatranscriptome225Y
F020884Metagenome221Y

Sequences

Protein IDFamilyRBSSequence
Ga0187873_10137941F020225GGAGMNQQAFQQVSQNSPEAIPTEMRRIEGREWWLWGFAVAVTLALTLGIISFTFPWFNRDKDVAYWFDLREWVRGLAALVLLFDFYAIYQHLQLHRIRRQLAE
Ga0187873_10137945F020884GGAGGMQIRSNHGELIGEINSGFTDKGEGVTTNTIYDRGNPVSQHISVRDNQGNVRTTNVIGGKILP

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