NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187884_10018567

Scaffold Ga0187884_10018567


Overview

Basic Information
Taxon OID3300018009 Open in IMG/M
Scaffold IDGa0187884_10018567 Open in IMG/M
Source Dataset NamePeatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_20_40
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3759
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002108Metagenome / Metatranscriptome592Y
F011500Metagenome / Metatranscriptome290Y

Sequences

Protein IDFamilyRBSSequence
Ga0187884_100185672F002108AGGTGGMSSTPEPALESSPSNTASIKPRPFRVKLRGSILALIRLPNRRQVRGKLHQISTTGGLLNVEAPLDEKLKVELIFHLGETTIREKVEMLFPMWATQGWLQPFRFVDLPEANKNVLETHLKAFVQQTQG
Ga0187884_100185673F011500N/AVSQNQAKLRVTFVTFICSFLGGAACRFCQTSVLAAYKNRGMEILTPKATRQSTRLRVQIFLTATSLDRVHPFSAKCVALVVSAQGCGLSTPQALPLETPVLLSDLPGGGSASGRVASCLPLGNDGKQFLIGVALYNHGNVWGIADPPEDWNCASTAPAASPSVTKNAVPRSKDKNVWPYNLFSGHSETNPRRR
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