NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0187884_10015314

Scaffold Ga0187884_10015314


Overview

Basic Information
Taxon OID3300018009 Open in IMG/M
Scaffold IDGa0187884_10015314 Open in IMG/M
Source Dataset NamePeatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_20_40
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4287
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (100.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfovibrionales → Desulfovibrionaceae → Desulfovibrio → Desulfovibrio litoralis → Desulfovibrio litoralis DSM 11393(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002761Metagenome / Metatranscriptome531Y
F005112Metagenome / Metatranscriptome411Y
F007120Metagenome357Y
F015428Metagenome254Y
F016631Metagenome245Y

Sequences

Protein IDFamilyRBSSequence
Ga0187884_100153141F016631GAGGMNPLANLALSVGETLVHEGGRLLFGIALGRAKELLGTPQPLGTRQLALNRALEKKAVDGALLVGPRTGKEYAKFNLKKGLPTDQRPRTLAVENEPHSVDDFDGVITEGYGKGEKRLIYSGTGVIKVGGSCQLGKINVHEHDADKAGFHYDFVAEGVDPHTESFEVNIANGVLKGRYAFRQAFEENRYLVVRLKDNSVLVAKPDIHLKPPEFLKTICQSDRPVSVEWKDDGALSNVAIHNLQAVYRSHRPEGEPYYDKLPAIEDLRNRSPVWLARRLFPGPEQEGTVLRGELHHPDGAARV
Ga0187884_100153143F005112AGGAGMSLVTRYRLFWAALMAALLGLAFWKNSRSYPHKSPLWRLGKAVIDTGLVVVMVIYAPALLLMYVVIWLTSPFKNKIIQVSAAFASILAITHLAGVAFEAVAVLGVFAVDLLSGQVVARMEKREGNKLAKAA
Ga0187884_100153144F007120AGGAGGMKTLIIILSVVCAGVAYYFGLRYFSGRDLGFTPARKYVRNLAVNLLHTEVTAAREAGATSATTTE
Ga0187884_100153145F002761AGGAGGMTFTPSATSSFSAGAVFWGMVWATLGKLNELVHFVGFKKSNPRQTVLRWINAHKVVTITLTEAVNYSVHGISSPLGVTFALGGTLVNLCMVTFIVPIWCRLSNLESH
Ga0187884_100153147F015428AGGAGGLTGILELFALVEMGSGIGFLLRWRNRLLASKVNYFRPPHNRKSPFDKLVRAQTGPAITRQDQLSVKLADGLTILVRRLVMLDAFRQLMRALALPNSPLRRRLRGRRRLS
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.