NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187891_1063692

Scaffold Ga0187891_1063692


Overview

Basic Information
Taxon OID3300017996 Open in IMG/M
Scaffold IDGa0187891_1063692 Open in IMG/M
Source Dataset NamePeatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_21_40
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1494
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019938Metagenome / Metatranscriptome226Y
F093186Metagenome / Metatranscriptome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0187891_10636922F093186GGAGMTKELLDYRQLERQLWMIRWRHEGEESPEEDAILDEMEEKWMNLTDAEQAALRLEGPSCWPTDPTSLPPRLADSLYPSLPTPWAYEGFHSPNEAILSADAA
Ga0187891_10636924F019938AGGAGGVTVHLPPKIERIVNDAVRSGQYGSAEEVLSEAVSVWQARQTTAAPTNDERQAAIERLRGFGKTHQLSLGGMTIKQLRDEARP

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