NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181520_10000321

Scaffold Ga0181520_10000321


Overview

Basic Information
Taxon OID3300017988 Open in IMG/M
Scaffold IDGa0181520_10000321 Open in IMG/M
Source Dataset NamePeatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin02_30_metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)105967
Total Scaffold Genes93 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)78 (83.87%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)47.1149Long. (o)-88.5476Alt. (m)Depth (m).3 to .4
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006314Metagenome / Metatranscriptome376Y
F067328Metagenome / Metatranscriptome125Y
F091596Metagenome / Metatranscriptome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0181520_1000032116F091596GGAGGMAHEQGSEAPQTGIYWCSVCKLPVKFKAGETLPVCKNLCGRGKWEFVRAEK
Ga0181520_100003215F006314GAGGMTHMKLQAALDELERLCDTVKGYKERNGKLPANPDSDAGRALASLEAFTSELHKLNIPRVLEHRP
Ga0181520_1000032154F067328N/AMALVWLVECKICALRFALLPREAVAGKSTGALVRNTEVGRFECPHCHEFQDYSTDDFIPGEGRIVARRQPEQ
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