NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0180431_10333835

Scaffold Ga0180431_10333835


Overview

Basic Information
Taxon OID3300017987 Open in IMG/M
Scaffold IDGa0180431_10333835 Open in IMG/M
Source Dataset NameHypersaline lake sediment archaeal communities from the Salton Sea, California, USA - SS_1_MS_1 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1096
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Sediment → Hypersaline Lake Sediment → Hypersaline Lake Sediment Archaeal Communities From The Salton Sea, California, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.4166Long. (o)-115.9166Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F039532Metagenome / Metatranscriptome163Y
F040583Metagenome / Metatranscriptome161Y
F054790Metagenome / Metatranscriptome139Y
F096774Metagenome104Y

Sequences

Protein IDFamilyRBSSequence
Ga0180431_103338351F040583N/ANEMFVYLVTTTDGFVARITTAGDPTDHPTFWGRVANVETLGEADLHAV
Ga0180431_103338354F054790AGGAMTLSEAWFDIYRAFPDNAFDYVGKPFYNDNDGSIQLWNGSKMVTYYSAPF
Ga0180431_103338355F039532AGGAGMSEPYWKYLPEGTFSEDELWEAIAESKGIDVNEIMDGDLAEWL
Ga0180431_103338356F096774GGAGMAMRSNLELNDYEFIAMNNLKRAALALSDGDYNHVEACVGEVLECM
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