NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0180431_10067769

Scaffold Ga0180431_10067769


Overview

Basic Information
Taxon OID3300017987 Open in IMG/M
Scaffold IDGa0180431_10067769 Open in IMG/M
Source Dataset NameHypersaline lake sediment archaeal communities from the Salton Sea, California, USA - SS_1_MS_1 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3099
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Sediment → Hypersaline Lake Sediment → Hypersaline Lake Sediment Archaeal Communities From The Salton Sea, California, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.4166Long. (o)-115.9166Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F053982Metagenome140N
F054452Metagenome / Metatranscriptome140N
F079390Metagenome / Metatranscriptome116N

Sequences

Protein IDFamilyRBSSequence
Ga0180431_100677692F053982N/AMKKKQRMHYYGVLITYNPYDDTWYSFHKDEMMKYFMDRNSVECGKGKDCMSAMNDYLSKKITSALS
Ga0180431_100677695F079390N/AMDKPKNFKELKKRLQPFVNMDNQVRLNQESTVTNVGHMIGTHVKILEANPGNRVYMPYYDRLVMLLTILEAGWE
Ga0180431_100677699F054452N/AMSDELKMMLLKELMFGKDVWDHEHHEEIMFLNDFGFVKLYDDNMQFAATTEMGIEELARLIKLYFVFLN
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