Scaffold Ga0181590_10210987

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0181590_10210987

Scaffold Ga0181590_10210987

Overview

Basic Information
Taxon OID	3300017967 Open in IMG/M
Scaffold ID	Ga0181590_10210987 Open in IMG/M
Source Dataset Name	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071411BT metaG (megahit assembly)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1453
Total Scaffold Genes	7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (42.86%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Associated Families	3

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location Name	USA: Georgia
Coordinates	Lat. (^o)	31.972	Long. (^o)	-81.028	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F004722	Metagenome	426	Y
F006109	Metagenome	381	Y
F017824	Metagenome	238	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181590_102109873	F017824	N/A	MNNAVLQWKEDFERSQRLGEGRSRTSAEKSELFELMIWIGGQGAMRDLIRAESLQQAIQFAQNRYPNCRVDVPPKAAKKPKLARSHTSPSLVERRRKQAAEGK
Ga0181590_102109874	F006109	N/A	MTRYVVMAGDRWVTAIYGPGKGIAVTRVREDASSWPNYERAVVAARAAADCTSSPVAIHSIDEPAY
Ga0181590_102109876	F004722	GAG	MSRTGREMMLEWLYKEIRLAKTADLQRAAAFLEWARGIRKGCSKQRGGARVAQANAWRKGVDRDLRWEVYCVSVCYCVGD

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