NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0181590_10130290

Scaffold Ga0181590_10130290


Overview

Basic Information
Taxon OID3300017967 Open in IMG/M
Scaffold IDGa0181590_10130290 Open in IMG/M
Source Dataset NameCoastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071411BT metaG (megahit assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1940
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.972Long. (o)-81.028Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008029Metagenome / Metatranscriptome340N
F054924Metagenome / Metatranscriptome139N

Sequences

Protein IDFamilyRBSSequence
Ga0181590_101302903F008029AGGALNLVGLKELAELLDVPYDTLKVWKNRDRLPEPFQVISGTPVWDWDESEKDFRSIQKNENSGRPKKPKISIAGGLIEIDVKGSKKDKDDNVSIRVMGKSFVDIQTESAQSNSKSKNVSIKVLGKKVVDINTDDFIEVDKEDTDSENS
Ga0181590_101302904F054924AGGAGGVKTVEVKIRRIPGMIISLLLLYLTAVVSIFFLKVAFFFAAIGVVFKSFSN

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.