NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0190266_10028540

Scaffold Ga0190266_10028540


Overview

Basic Information
Taxon OID3300017965 Open in IMG/M
Scaffold IDGa0190266_10028540 Open in IMG/M
Source Dataset NamePopulus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 220 T
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1744
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Populus Soil Microbial Communities From Riparian Zone Of Different River Systems In The Western United States

Source Dataset Sampling Location
Location NameUSA: Utah
CoordinatesLat. (o)37.9013Long. (o)-109.5337Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018922Metagenome / Metatranscriptome232Y
F020005Metagenome / Metatranscriptome226Y

Sequences

Protein IDFamilyRBSSequence
Ga0190266_100285401F020005AGGAGGMKRIFIPLTIVALAALALAAPAVQAKGGKDGRIIALKASSAFPGAKGKAKFQTEGQRELEIEVEHVRRLAGKQVNFFVGARKVGSKRISALGAAQLDRRGSNFPAIGSGTRISVKTASGRLIVSGRF
Ga0190266_100285403F018922N/AHSFIDGGSNVLALVAMSVIGLGASGSVAASRQANALFLVRGELLADPPSGSSALIVDVAGGNRRALRLLVGQSSAQSFAVGPNTQYLRWAHGVPTVVTQDNLAEGDQLTLRIRAPRGSSLAQLLATPAGNVADRGPSPGRPAKPLWLFQGALNAPASNGHLGIHVQDGNYRALKAMLGQSQDQAFAYGRRTVFIRWQGRVPTLISPSQLVVGERVSIRIRARGAASLGEVESTPANHVAAHGRPAA
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