NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187779_10000021

Scaffold Ga0187779_10000021


Overview

Basic Information
Taxon OID3300017959 Open in IMG/M
Scaffold IDGa0187779_10000021 Open in IMG/M
Source Dataset NameTropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_10_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)115487
Total Scaffold Genes104 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)74 (71.15%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location
Location NameColombia: Department of Meta
CoordinatesLat. (o)3.8381Long. (o)-73.3194Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000231Metagenome / Metatranscriptome1516Y
F001287Metagenome / Metatranscriptome731Y
F039764Metagenome / Metatranscriptome163Y

Sequences

Protein IDFamilyRBSSequence
Ga0187779_1000002132F000231AGGAGMTNTTVPNPYYRCAGPNCGTLKTSNQRWWLMWTSFTDHKTPVLYLCPWDENIAQREGTLHVCGELCAQRLQSQFMGNVLENILKRG
Ga0187779_100000214F039764N/AMCNRLHLLWCACGLVAWSICYAQSSLSPSPRVIELSADRDSRYRQGHKASPTVEVFAGEPLILRITAVQAKEVARDGSVHGLALLDKDSNAVPGWRFFLHPGVQDLAVTAPAQPGRYNAVCIVICSAAHEGMGFTLLVADPGTNSKD
Ga0187779_100000219F001287GGGGGMKFMHVCYAALGFAVARWIFRRQSLLVKDPVARLRSSGLL
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