NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181580_10282574

Scaffold Ga0181580_10282574


Overview

Basic Information
Taxon OID3300017956 Open in IMG/M
Scaffold IDGa0181580_10282574 Open in IMG/M
Source Dataset NameCoastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071403BT metaG (megahit assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1135
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.972Long. (o)-81.028Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003976Metagenome / Metatranscriptome459Y
F010532Metagenome302N
F010571Metagenome302Y
F038195Metagenome166Y

Sequences

Protein IDFamilyRBSSequence
Ga0181580_102825741F010532AGGAGGMNRTLYKKLEDICAREYILNKLSSSKFRTFVDFLYDDIRTWDKPMEVSDVDIIHRIEEHMSYMVSSYLTKSYEGIGMEQEALKQV
Ga0181580_102825742F003976GGAGGMSRLYNDYYFEKLDILDTLDKLDMSVRLLNVWVNEPMGLENAKYLLEKNANQKFNWFSRDMVKELVEEESK
Ga0181580_102825743F010571AGGAGGMSMNTRQAIYIENLYEGFYEKHYEELSKTSDDVEWIENEASRLAEIDLDNFEMEG
Ga0181580_102825744F038195GAGGMEEVIYMRQDSKIKLHKDFYEYKTIPFTYFAKIKNRHDFKREWVSVKCQEDIMKQKPINVEIRRLKKNV
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